[Simnibs-discuss] Brainstem visualization

[Atsushi Shima]

Dear Oula,

Thank you. I could visualize the brainstem.

I really appreciate your help.

Best,
Atsushi

2023年1月17日(火) 22:37 Oula Puonti <oulap at drcmr.dk>:

> Hi Atsushi,
>
> In gmsh if you select Tools -> Visibility, and then select WM in the
> tissues list (along with GM if you like) you should be able to see the
> brain stem.
>
> Best,
> Oula
>
>
> On Tue, 2023-01-17 at 13:15 +0900, Atsushi Shima wrote:
> > Dear Oula,
> >
> > Thank you for your reply.
> > I wanted to display the results of the simulation on the brainstem,
> > instead of creating labels for the brainstem.
> > Similarly in Ernie, the brainstem was not displayed in the results.
> > Do I need to process to display of the white matter in gmsh?
> > I appreciate your help.
> >
> > Best,
> > Atsushi
> > BS.pngBS2.png
> >
> > 2023年1月17日(火) 7:59 Oula Puonti <oulap at drcmr.dk>:
> > > Hi Atsushi,
> > >
> > > Are you trying to create a separate label for the brain stem? It
> > > should
> > > be part of the white matter in the standard charm output.
> > >
> > > You said that you can see the brain stem on ernie, so I'm wondering
> > > if
> > > something went wrong when you ran the specific subject where you
> > > cannot
> > > see the brain stem.
> > >
> > > Could you maybe send us a screenshot showing the problem?
> > >
> > > Thanks,
> > > Oula
> > >
> > >
> > > On Sun, 2023-01-15 at 21:20 +0900, Atsushi Shima wrote:
> > > >  Dear SimNIBS Team,
> > > >
> > > > Thank you for the wonderful program. I have a couple of
> > > > questions.
> > > >
> > > > I would like to visualize the brainstem.
> > > > The pipeline of "charm" seems working well. However, when we see
> > > > the
> > > > results with gmsh, there is a lack of the brainstem.
> > > > I also tried the test data (ernie m2m), however, I could see the
> > > > brainstem.
> > > >
> > > > Is it possible to visualize the brainstem in SimNIBS version
> > > > 4.0.0?
> > > > (I could see the previous papers describing the brainstem by v2
> > > > or
> > > > 3.)
> > > > I appreciate your help.
> > > >
> > > > Sincerely,
> > > > Atsushi Shima
> > > > _______________________________________________
> > > > Simnibs-discuss mailing list
> > > > Simnibs-discuss at drcmr.dk
> > > > https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss
> > >
>
>
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