[Simnibs-discuss] "Value Error" in charm pipeline - same issue as posted in December

[Daniel McCalley]

Hi all,

I'm writing to report a similar instance of an error using the new Charm pipeline. The issue is nearly identical to the one Mariia Nazarova posted to the boards in December. I saw that Oula had followed up asking to take a peek at the T1 itself to see if there are any obvious issues.

I have the same issue as Mariia (charm_log attached) and specific error pasted below. I reviewed my anatomical scans and did not find any obvious issues (screenshot below as well).

ValueError: could not broadcast input array from shape (175,255,256) into shape (175,255,256,1)
CRITICAL: Uncaught exception
ValueError: could not broadcast input array from shape (175,255,256) into shape (175,255,256,1)

Happy to share a T1 that did and did not work through the charm pipeline if that would be helpful for troubleshooting!

Best,

Dan McCalley, Ph.D.
Postdoctoral Scholar, Padula BRAVE lab
Stanford University
School of Medicine, Psychiatry and Behavioral Sciences
(he/him)
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