[Simnibs-discuss] Diffusion tensor information ignored

Axel Thielscher axelt at drcmr.dk
Fri Jul 1 18:13:21 CEST 2022


giving the file name of the tensors is not enough. You also have to 
specify the *anisotropy_type* for each simulation list, see e.g. here*:**




On 29-06-2022 13:14, Maximilian Lückel wrote:
> Hi,
> whenever I run simulations using a python script, the diffusion tensor 
> information in |d2c_subID/dti_results_T1space/DTI_conf_tensor.nii.gz| 
> is being ignored, stating that "isotropic conductivities" are used. 
> This is even the case when explicitly specifying the path to the NifTi 
> file with conductivity tensors in s.fname_tensor. Any idea why that is?
> Thanks,
> Max
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Dr. Axel Thielscher
Professor of Neurophysics and Neuroimaging
Danish Research Center for Magnetic Resonance
Copenhagen University Hospital Hvidovre
DK-2650 Hvidovre, Denmark
Department of Health Technology
Technical University of Denmark
DK-2800 Kgs. Lyngby
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