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<p>Hi,</p>
<p>giving the file name of the tensors is not enough. You also have
to specify the <strong>anisotropy_type</strong> for each
simulation list, see e.g. here<strong>:</strong><strong><br>
</strong></p>
<p><a class="moz-txt-link-freetext" href="https://simnibs.github.io/simnibs/build/html/documentation/sim_struct/tdcslist.html">https://simnibs.github.io/simnibs/build/html/documentation/sim_struct/tdcslist.html</a><br>
</p>
<p>Best,</p>
<p>Axel</p>
<div class="moz-cite-prefix">On 29-06-2022 13:14, Maximilian Lückel
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:1947686326.2098614.1656501273258@mail.yahoo.com">
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<p>Hi,</p>
<div dir="ltr" data-setdir="false">whenever I run
simulations using a python script, the diffusion tensor
information in <code class="ydpf6672645notranslate">d2c_subID/dti_results_T1space/DTI_conf_tensor.nii.gz</code>
is being ignored, stating that "isotropic conductivities"
are used. This is even the case when explicitly specifying
the path to the <span>NifTi file with conductivity
tensors in s.<span>fname_tensor.</span> </span>Any idea
why that is?<span></span></div>
<p>Thanks,<br>
Max</p>
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<br>
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<pre class="moz-quote-pre" wrap="">_______________________________________________
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</blockquote>
<pre class="moz-signature" cols="72">--
Dr. Axel Thielscher
Professor of Neurophysics and Neuroimaging
Danish Research Center for Magnetic Resonance
Copenhagen University Hospital Hvidovre
DK-2650 Hvidovre, Denmark
<a class="moz-txt-link-abbreviated" href="http://www.drcmr.dk">www.drcmr.dk</a>
&
Department of Health Technology
Technical University of Denmark
DK-2800 Kgs. Lyngby
<a class="moz-txt-link-freetext" href="http://www.healthtech.dtu.dk/">http://www.healthtech.dtu.dk/</a></pre>
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