[Simnibs-discuss] Simnibs error - could not find tissue probability maps

[Lukas Hensel]

Dear all,

My name is Lukas Hensel and im researching on TMS in stroke in the university hospital in cologne, Germany. Trying to run the headreco, I’m encountering the following error (Command window and headreco_logposted below, System: macOS Catalina V10.15.7). I’m grateful for any ideas how to solve this.

Best
Lukas



###### terminal log:

lukashensel at Lukass-MacBook-Pro 0_2219 % headreco all 0_2219 3D/2219S160810_174718_0006_t1_mprage_0.9mm.nii 3D/2219S160810_175251_0007_t2w_space_0.9mm.nii

========================================================================
PREPARING VOLUMES FOR MESHING
========================================================================

Copying input files to m2m_0_2219

Copying T1fs.nii.gz to T1fs_conform.nii.gz
Preparing to segment

Starting MATLAB
========================================================================
Binarizing tissue probability maps
Traceback (most recent call last):
  File "/Users/lukashensel/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 13, in <module>
    main()
  File "/Users/lukashensel/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 10, in main
    headmodel(sys.argv)
  File "/Users/lukashensel/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh/headreco.py", line 265, in headmodel
    raise OSError('Could not find tissue probability maps.\n'
OSError: Could not find tissue probability maps.
Probably something went wrong with the Matlab call or SPM
(base) lukashensel at Lukass-MacBook-Pro 0_2219 % 

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