[Simnibs-discuss] mri2mesh error

[Desmond Oathes]

Will give it a try.  Thanks much!

On Wed, Dec 9, 2020, 11:37 AM Axel Thielscher <axelt at drcmr.dk> wrote:

> Hi,
>
> we tracked the error down to the use of Freesurfer 7 instead of Freesurfer
> 6.
>
> mri2mesh uses mris_convert from freesurfer to convert the the freesurfer
> surfaces to .stl-files. Up to version 6, mris_convert wrote ascii
> .stl-files; since freesurfer 7, it writes only binary .stl-files. Because
> meshfix can only read ascii stl-files, it crashes.
>
> So, for now, the work around is to use Freesurfer 6.0.1...
>
> Hope this helps.
>
> Best regards,
>
> Axel
>
>
>
> On 12/9/2020 5:27 PM, Smyk, Nathan wrote:
>
> Good morning Valerie,
>
>
>
> This is a long shot e-mail! My name is Nate Smyk, and I’m working at the
> University of Pennsylvania in neuroimaging, and I am having the same issue
> with Simnibs that you had reported here:
> https://mailman.drcmr.dk/pipermail/simnibs-discuss/2020-May/000051.html.
> I saw Axel responded saying Mac Catalina might be the issue (which I am
> also running on now). Did you happen to find a fix for this fseek issue?
> Any insight would be GREATLY appreciated!!!
>
>
>
> ERROR- fseek
>
>
> /Users/guilherme/simnibs_supporting/meshfix/contrib/JMeshLib/src/MESH_STRUCTURE/io.cpp:1335
>
> failed.exiting mri2mesh after error
>
>
>
>
>
> Best,
>
> Nate Smyk
>
> _______________________________________________
> Simnibs-discuss mailing listSimnibs-discuss at drcmr.dkhttps://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss
>
> --
> Dr. Axel Thielscher
> Associate Professor
> Danish Research Center for Magnetic Resonance
> Copenhagen University Hospital Hvidovre
> DK-2650 Hvidovre, Denmarkwww.drcmr.dk
> &
> Department of Health Technology
> Technical University of Denmark
> DK-2800 Kgs. Lyngbyhttp://www.healthtech.dtu.dk/
>
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>
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