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<p class="MsoNormal">Hello, <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I have come across a very strange issue creating the reconstruction with charm. I input a T1 with full coverage of the skull, but the model it created looks like this. The T1_upsampled, T1_bias_corrected, and T1 nifti files in the m2m folder
all show the full scan. The surface files however reflect only the bottom half of the brain like what I view in the simnibs gui.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I’m re-running this now with the same issue and can share the terminal output when it concludes. The command I used was ‘charm subID T1.nii.gz’.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I appreciate any advice or thoughts others have!<o:p></o:p></p>
<p class="MsoNormal">Mags M. <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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