<html xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252">
<meta name="Generator" content="Microsoft Word 15 (filtered medium)">
<style><!--
/* Font Definitions */
@font-face
{font-family:"Cambria Math";
panose-1:2 4 5 3 5 4 6 3 2 4;}
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0in;
font-size:10.0pt;
font-family:"Calibri",sans-serif;}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:#0563C1;
text-decoration:underline;}
pre
{mso-style-priority:99;
mso-style-link:"HTML Preformatted Char";
margin:0in;
margin-bottom:.0001pt;
font-size:10.0pt;
font-family:"Courier New";}
span.HTMLPreformattedChar
{mso-style-name:"HTML Preformatted Char";
mso-style-priority:99;
mso-style-link:"HTML Preformatted";
font-family:"Courier New";}
span.EmailStyle21
{mso-style-type:personal-reply;
font-family:"Calibri",sans-serif;
color:windowtext;}
.MsoChpDefault
{mso-style-type:export-only;
font-size:10.0pt;}
@page WordSection1
{size:8.5in 11.0in;
margin:1.0in 1.0in 1.0in 1.0in;}
div.WordSection1
{page:WordSection1;}
--></style>
</head>
<body lang="EN-US" link="#0563C1" vlink="#954F72" style="word-wrap:break-word">
<div class="WordSection1">
<p class="MsoNormal"><span style="font-size:11.0pt">Ah, I see my mistake. I thought that FSL was the acronym for FreeSurfer. I’ll try running with Free Surfer version<7. Please disregard.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Mags<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal" style="margin-bottom:12.0pt"><b><span style="font-size:12.0pt;color:black">From:
</span></b><span style="font-size:12.0pt;color:black">Margaret McAllister <margaret.mcallister@duke.edu><br>
<b>Date: </b>Wednesday, October 19, 2022 at 9:06 AM<br>
<b>To: </b>discuss@simnibs.org <discuss@simnibs.org><br>
<b>Subject: </b>Meshfix error in SimNIBS-3.2.6, Running FSL 6.0.3<o:p></o:p></span></p>
</div>
<p class="MsoNormal"><span style="font-size:11.0pt">Hello, <o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">I’m using SimNIBS-3.2.6 to generate head segmentation for a subject. I don’t have a T2 image for this participant. I am using mri2mesh because the scan does not include neck and shoulders. This is the error I encountered. </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">mris_convert ./opticrad_FS.fsmesh ./opticrad_FS.stl</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">/usr/local/packages/simnibs/3.2.6/simnibs_env/lib/python3.7/site-packages/simnibs/bin/linux/meshfix subcortical_FS.stl -a 2.0 --remove-handles -q -o subcortical.off</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">ERROR- fseek /home/guilherme/simnibs_misc/meshfix/contrib/JMeshLib/src/MESH_STRUCTURE/io.cpp:1335 failed.error code 255</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">exiting mri2mesh</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:black">In the previous discussion (linked below) this error was resolved by using a version of FSL >7. I am running fsl version 6.0.3 so that is not the issue for me. </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><a href="https://mailman.drcmr.dk/pipermail/simnibs-discuss/2021-April/000205.html">https://mailman.drcmr.dk/pipermail/simnibs-discuss/2021-April/000205.html</a></span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">Is there a solution to this issue?</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">Thanks!</span><o:p></o:p></pre>
<pre><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">Mags M. </span><o:p></o:p></pre>
<p class="MsoNormal"><span style="font-size:11.0pt"> <o:p></o:p></span></p>
</div>
</body>
</html>