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<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Dear Axel,
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">One more question: What about the stimulation intensities? Can we adjust the intensity to check if the overlap is influenced by it?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Kind regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="en-NL" style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN" style="font-size:10.0pt;color:#F47321">Aline Dantas </span></b><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><i><span lang="EN" style="font-size:10.0pt;color:#939598">PhD candidate</span></i><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><i><span lang="EN" style="font-size:10.0pt;color:#939598">Human Decision and Policy Design</span></i><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><i><span lang="EN" style="font-size:10.0pt;color:#939598">Departments of Marketing and Supply Chain Management (SBE) and Cognitive Neurosciences (FPN)</span></i><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN" style="font-size:10.0pt;color:#939598">Room F2.02. Tongersestraat 53, 6211 LM </span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN" style="font-size:10.0pt;color:#939598">Room 2.018. Oxfordlaan 55, 6229 EV </span><span lang="en-NL"><o:p></o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US">From:</span></b><span lang="EN-US"> Dantas, A (MW)
<br>
<b>Sent:</b> Wednesday, 2 June 2021 15:10<br>
<b>To:</b> 'Axel Thielscher' <axelt@drcmr.dk>; discuss@simnibs.org; jonas.persson@neuro.uu.se<br>
<b>Cc:</b> Ébner, Nancy (Stud. FHML / Alumni UCV) <n.ebner@student.maastrichtuniversity.nl><br>
<b>Subject:</b> RE: [Simnibs-discuss] SimNIBS simulation - TMS study - Overlap figure<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Thank you very much! I’ll try this solution.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Kind regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Aline Dantas<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="en-NL" style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US">From:</span></b><span lang="EN-US"> Axel Thielscher <<a href="mailto:axelt@drcmr.dk">axelt@drcmr.dk</a>>
<br>
<b>Sent:</b> Wednesday, 2 June 2021 14:50<br>
<b>To:</b> Dantas, A (MW) <<a href="mailto:a.dantas@maastrichtuniversity.nl">a.dantas@maastrichtuniversity.nl</a>>;
<a href="mailto:discuss@simnibs.org">discuss@simnibs.org</a>; <a href="mailto:jonas.persson@neuro.uu.se">
jonas.persson@neuro.uu.se</a><br>
<b>Cc:</b> Ébner, Nancy (Stud. FHML / Alumni UCV) <<a href="mailto:n.ebner@student.maastrichtuniversity.nl">n.ebner@student.maastrichtuniversity.nl</a>><br>
<b>Subject:</b> Re: [Simnibs-discuss] SimNIBS simulation - TMS study - Overlap figure<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="en-NL"><o:p> </o:p></span></p>
<p><span lang="en-NL">Hi,<o:p></o:p></span></p>
<p><span lang="en-NL">for determining an overlap, you will have to set a threshold to then show the regions where both TMS fields exceed this threshold. In the attached example code , I've used 0.75 as threshold, please adjust this according to your needs.
<o:p></o:p></span></p>
<p><span lang="en-NL">Regions where the first stimulation exceeds the threshold are coded as 1, regions where the second stimulation exceeds the threshold are coded as 2, the overlap is coded as 3.<o:p></o:p></span></p>
<p><span lang="en-NL"><img border="0" width="559" height="349" style="width:5.8177in;height:3.6354in" id="Picture_x0020_1" src="cid:image001.png@01D75DEF.F4C11360"></span><span lang="en-NL"><o:p></o:p></span></p>
<p><span lang="en-NL">Best regards,<o:p></o:p></span></p>
<p><span lang="en-NL">Axel<o:p></o:p></span></p>
<p><span lang="en-NL"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span lang="en-NL">On 5/26/2021 2:33 PM, Dantas, A (MW) wrote:<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Dear all,
</span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">My student Nancy Ébner got in touch with you recently about the need for a Magventure double cone coil simulation using SimNIBS.
</span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">We ran the simulations successfully, so first of all I would like to thank you!</span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">We have an experiment deactivating the VMPFC vs. deactivating the right DLPFC. So far, we managed to run both simulations, but it would be great if we could the overlap image of stimulating
these two areas. We tried to make it but did not succeed. </span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Do you think you could help me to build that?</span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US"> </span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Thank you!</span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Kind regards,</span><span lang="en-NL"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:EN-US">Aline Dantas</span><span lang="en-NL"><o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="en-NL" style="color:black"> </span><span lang="en-NL"><o:p></o:p></span></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><span lang="en-NL"><o:p> </o:p></span></p>
<pre><span lang="en-NL">_______________________________________________<o:p></o:p></span></pre>
<pre><span lang="en-NL">Simnibs-discuss mailing list<o:p></o:p></span></pre>
<pre><span lang="en-NL"><a href="mailto:Simnibs-discuss@drcmr.dk">Simnibs-discuss@drcmr.dk</a><o:p></o:p></span></pre>
<pre><span lang="en-NL"><a href="https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss">https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss</a><o:p></o:p></span></pre>
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<pre><span lang="en-NL">-- <o:p></o:p></span></pre>
<pre><span lang="en-NL">Dr. Axel Thielscher<o:p></o:p></span></pre>
<pre><span lang="en-NL">Professor of Neurophysics and Neuroimaging<o:p></o:p></span></pre>
<pre><span lang="en-NL">Danish Research Center for Magnetic Resonance<o:p></o:p></span></pre>
<pre><span lang="en-NL">Copenhagen University Hospital Hvidovre<o:p></o:p></span></pre>
<pre><span lang="en-NL">DK-2650 Hvidovre, Denmark<o:p></o:p></span></pre>
<pre><span lang="en-NL"><a href="http://www.drcmr.dk">www.drcmr.dk</a><o:p></o:p></span></pre>
<pre><span lang="en-NL">&<o:p></o:p></span></pre>
<pre><span lang="en-NL">Department of Health Technology<o:p></o:p></span></pre>
<pre><span lang="en-NL">Technical University of Denmark<o:p></o:p></span></pre>
<pre><span lang="en-NL">DK-2800 Kgs. Lyngby<o:p></o:p></span></pre>
<pre><span lang="en-NL"><a href="http://www.healthtech.dtu.dk/">http://www.healthtech.dtu.dk/</a><o:p></o:p></span></pre>
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