<HTML><HEAD><TITLE>headreco report</TITLE></HEAD><BODY><pre>2020-11-16 15:48:50 [DEBUG] /Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py all MVP-07 org/MVP-07_T1.nii org/MVP-07_T2.nii
2020-11-16 15:48:50 [INFO ] ========================================================================
2020-11-16 15:48:50 [INFO ] PREPARING VOLUMES FOR MESHING
2020-11-16 15:48:50 [INFO ] ========================================================================
2020-11-16 15:48:50 [INFO ] Copying input files to m2m_MVP-07
2020-11-16 15:48:51 [INFO ] Copying T1fs.nii.gz to T1fs_conform.nii.gz
2020-11-16 15:48:52 [INFO ] Preparing to segment
2020-11-16 15:48:53 [INFO ] Starting MATLAB
2020-11-16 15:48:53 [INFO ] ========================================================================
2020-11-16 15:48:53 [DEBUG] Running matlab -nosplash -nodesktop -r "addpath('/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh','/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/spm12');try,segment_SPM('/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/templates','/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/spm/T1fs_conform.nii','/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/spm/T2.nii',0.01,3,0); segment_CAT('/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/cat/T1fs_conform.nii','/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/templates',0);catch ME,rethrow(ME);end,exit;"
2020-11-16 15:48:53 [INFO ] Binarizing tissue probability maps
2020-11-16 15:48:53 [ERROR] Traceback (most recent call last):
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 13, in <module>
main()
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 10, in main
headmodel(sys.argv)
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh/headreco.py", line 265, in headmodel
raise OSError('Could not find tissue probability maps.\n'
OSError: Could not find tissue probability maps.
Probably something went wrong with the Matlab call or SPM
<HTML><HEAD><TITLE>headreco report</TITLE></HEAD><BODY><pre>2020-11-16 16:10:17 [DEBUG] /Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py all MVP-07 org/MVP-07_T1.nii org/MVP-07_T2.nii
2020-11-16 16:10:17 [INFO ] ========================================================================
2020-11-16 16:10:17 [INFO ] PREPARING VOLUMES FOR MESHING
2020-11-16 16:10:17 [INFO ] ========================================================================
2020-11-16 16:10:17 [INFO ] Copying input files to m2m_MVP-07
2020-11-16 16:10:18 [INFO ] Copying T1fs.nii.gz to T1fs_conform.nii.gz
2020-11-16 16:10:19 [INFO ] Preparing to segment
2020-11-16 16:10:19 [INFO ] Starting MATLAB
2020-11-16 16:10:19 [INFO ] ========================================================================
2020-11-16 16:10:19 [DEBUG] Running matlab -nosplash -nodesktop -r "addpath('/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh','/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/spm12');try,segment_SPM('/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/templates','/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/spm/T1fs_conform.nii','/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/spm/T2.nii',0.01,3,0); segment_CAT('/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/cat/T1fs_conform.nii','/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/templates',0);catch ME,rethrow(ME);end,exit;"
2020-11-16 16:10:20 [INFO ] Binarizing tissue probability maps
2020-11-16 16:10:20 [ERROR] Traceback (most recent call last):
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 13, in <module>
main()
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 10, in main
headmodel(sys.argv)
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh/headreco.py", line 265, in headmodel
raise OSError('Could not find tissue probability maps.\n'
OSError: Could not find tissue probability maps.
Probably something went wrong with the Matlab call or SPM
<HTML><HEAD><TITLE>headreco report</TITLE></HEAD><BODY><pre>2020-11-16 16:11:29 [DEBUG] /Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py all MVP-07 org/MVP-07_T1.nii org/MVP-07_T2.nii
2020-11-16 16:11:29 [INFO ] ========================================================================
2020-11-16 16:11:29 [INFO ] PREPARING VOLUMES FOR MESHING
2020-11-16 16:11:29 [INFO ] ========================================================================
2020-11-16 16:11:29 [INFO ] Copying input files to m2m_MVP-07
2020-11-16 16:11:30 [INFO ] Copying T1fs.nii.gz to T1fs_conform.nii.gz
2020-11-16 16:11:31 [INFO ] Preparing to segment
2020-11-16 16:11:31 [INFO ] Starting MATLAB
2020-11-16 16:11:31 [INFO ] ========================================================================
2020-11-16 16:11:31 [DEBUG] Running matlab -nosplash -nodesktop -r "addpath('/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh','/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/spm12');try,segment_SPM('/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/templates','/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/spm/T1fs_conform.nii','/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/spm/T2.nii',0.01,3,0); segment_CAT('/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/cat/T1fs_conform.nii','/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/templates',0);catch ME,rethrow(ME);end,exit;"
2020-11-16 16:11:31 [INFO ] Binarizing tissue probability maps
2020-11-16 16:11:31 [ERROR] Traceback (most recent call last):
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 13, in <module>
main()
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 10, in main
headmodel(sys.argv)
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh/headreco.py", line 265, in headmodel
raise OSError('Could not find tissue probability maps.\n'
OSError: Could not find tissue probability maps.
Probably something went wrong with the Matlab call or SPM
<HTML><HEAD><TITLE>headreco report</TITLE></HEAD><BODY><pre>2020-11-16 16:20:58 [DEBUG] /Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py all MVP-07 org/MVP-07_T1.nii org/MVP-07_T2.nii
2020-11-16 16:20:58 [INFO ] ========================================================================
2020-11-16 16:20:58 [INFO ] PREPARING VOLUMES FOR MESHING
2020-11-16 16:20:58 [INFO ] ========================================================================
2020-11-16 16:20:58 [INFO ] Copying input files to m2m_MVP-07
2020-11-16 16:20:59 [INFO ] Copying T1fs.nii.gz to T1fs_conform.nii.gz
2020-11-16 16:21:00 [INFO ] Preparing to segment
2020-11-16 16:21:01 [INFO ] Starting MATLAB
2020-11-16 16:21:01 [INFO ] ========================================================================
2020-11-16 16:21:01 [DEBUG] Running matlab -nosplash -nodesktop -r "addpath('/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh','/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/spm12');try,segment_SPM('/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/templates','/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/spm/T1fs_conform.nii','/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/spm/T2.nii',0.01,3,0); segment_CAT('/Users/adam_kirton_imaging/Desktop/Adrianna/MVP/MVP-07/m2m_MVP-07/segment/cat/T1fs_conform.nii','/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/resources/templates',0);catch ME,rethrow(ME);end,exit;"
2020-11-16 16:21:01 [INFO ] Binarizing tissue probability maps
2020-11-16 16:21:01 [ERROR] Traceback (most recent call last):
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 13, in <module>
main()
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py", line 10, in main
headmodel(sys.argv)
File "/Users/adam_kirton_imaging/Applications/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh/headreco.py", line 265, in headmodel
raise OSError('Could not find tissue probability maps.\n'
OSError: Could not find tissue probability maps.
Probably something went wrong with the Matlab call or SPM