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<p>Hello,</p>
<p><br>
</p>
<p>You can script SimNIBS simulations in matlab or python
(<a class="moz-txt-link-freetext" href="https://simnibs.github.io/simnibs/build/html/tutorial/scripting.html">https://simnibs.github.io/simnibs/build/html/tutorial/scripting.html</a>).
Or you can open the ".mat" files in matlab, octave, or python and
modify them.<br>
</p>
<p>The "scalar", "vn", "dir" and "mc" refers to different
conductivity models (see <b>anisotropy_type</b> in
<a class="moz-txt-link-freetext" href="https://simnibs.github.io/simnibs/build/html/documentation/sim_struct/tdcslist.html">https://simnibs.github.io/simnibs/build/html/documentation/sim_struct/tdcslist.html</a>).
Unless you have a strong need to account for tissue conductivity
anisotropy effects, we recommend you use the "scalar" conductivity
model (that is isotropic conductivity, no DTI data required). If
you want to incorporate tissue conductivity anisotropy (requires
DTI data), we recommend you use the "vn" model. The other two are
there in a more experimental capacity.<br>
</p>
<p><br>
</p>
<p>Best Regards,</p>
<p>Guilherme<br>
</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 05/07/2020 01.41, du t. (td5u19)
wrote:<br>
</div>
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<p class="MsoNormal">Hi,<o:p></o:p></p>
<p class="MsoNormal">I am a junior learner of simNIBS, and I
used the command line tool simnibs ernie_simu.mat to do the
simulation and I get three simulation results. My question is
how to modify the mat file to do more simulation
automatically, and what’s the meaning of the three output file
TDCS_1_scalar, TDCS_2_dir and TDCS_3_vn?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Best regards<o:p></o:p></p>
<p class="MsoNormal">Tianyu Du<o:p></o:p></p>
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<pre class="moz-quote-pre" wrap="">_______________________________________________
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