[Simnibs-discuss] error while using charm (instead of headreco)

[Oula Puonti]

Hi Maria,

It seems that there's some sort of a dimensionality issue with the
scans:

ValueError: could not broadcast input array from shape (179,235,168)
into shape (179,)

Could you please inspect the T1.nii.gz and the T2_reg.nii.gz in a
viewer, e.g., freeview or fsleyes, to check that they look okay?

Thanks,
Oula


On Fri, 2022-12-09 at 02:40 +0000, Nazarova, Mariia wrote:
> Dear colleagues,
> I`m sorry for bothering! I was really excited about the release of
> the new segmentation algorithm and tried to use charm for the first
> time. Then I have the following error (attached). I`m quite an
> inexperienced Linux user, may you please help me to solve it?
> Thank you so much in advance!
> Best,
> Maria
> The information in this e-mail is intended only for the person to
> whom it is addressed.  If you believe this e-mail was sent to you in
> error and the e-mail contains patient information, please contact the
> Mass General Brigham Compliance HelpLine at
> https://www.massgeneralbrigham.org/complianceline .
> 
> Please note that this e-mail is not secure (encrypted).  If you do
> not wish to continue communication over unencrypted e-mail, please
> notify the sender of this message immediately.  Continuing to send or
> respond to e-mail after receiving this message means you understand
> and accept this risk and wish to continue to communicate over
> unencrypted e-mail.  
> _______________________________________________
> Simnibs-discuss mailing list
> Simnibs-discuss at drcmr.dk
> https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss