[Simnibs-discuss] dwi2cond error

Maximilian Lückel m.lueckel at yahoo.de
Tue Aug 9 17:25:07 CEST 2022

 Thanks, Axel, that solved the issue!

    Am Dienstag, 9. August 2022 um 10:56:16 MESZ hat Axel Thielscher <axelt at drcmr.dk> Folgendes geschrieben:  
please replace the attached file in your simnibs 4 installation, and let me know whether it resolved the issue. Inside the simnibs 4 folder, it is found in simnibs/external.
Best regards,

 On 09-08-2022 10:03, Maximilian Lückel wrote:

when running dwi2cond using SimNIBS4, I get the following error message:

echo ERROR: Input file <path-to-m2m_folder>/m2m_sub-017/labeling.nii.gz' doesn't exist. Did you run charm?

Indeed, labeling.nii.gz does not exist after running charm, for all of my subjects. Did something go wrong with charm or is this a problem of dwi2cond?
It seems to work, however, if I copy/rename the final_tissues.nii.gz file generated by charm to labeling.nii.gz.

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Dr. Axel Thielscher
Professor of Neurophysics and Neuroimaging
Danish Research Center for Magnetic Resonance
Copenhagen University Hospital Hvidovre
DK-2650 Hvidovre, Denmark
Department of Health Technology
Technical University of Denmark
DK-2800 Kgs. Lyngby
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