From chanyoungcheong at gm.gist.ac.kr Mon May 3 10:19:53 2021 From: chanyoungcheong at gm.gist.ac.kr (=?ks_c_5601-1987?B?waTC+b+1?=) Date: Mon, 3 May 2021 08:19:53 +0000 Subject: [Simnibs-discuss] Non-human mesh generation from .nii.gz label map Message-ID: Hello, My name is Chanyoung Cheong and I am a student in Gwangju Institute of Science and Technology. Using headreco, I am trying to generate whole-body mesh from a mouse label map with .nii.gz extension, where intensities of GM voxels are all 2, CSF voxels are all 3, and so on. Binarized .nii.gz files of GM, CSF, bones, skins, and eyes are also manually prepared. Is there a way to generate FEM mesh from these data? Running "headreco all" with label map results in totally wrong segmentation (maybe because templates are based on humans) and several program errors. Sincerely, Chanyoung Cheong -------------- next part -------------- An HTML attachment was scrubbed... URL: From axelt at drcmr.dk Tue May 4 09:52:18 2021 From: axelt at drcmr.dk (Axel Thielscher) Date: Tue, 4 May 2021 09:52:18 +0200 Subject: [Simnibs-discuss] creating rTMS e-field model with a known MNI coordinate In-Reply-To: References: Message-ID: <46846332-9d4e-73f2-4e69-767792fa0b73@drcmr.dk> Hi, in the graphical user interface, you can only define coil positions on the skin surface. You do not define target positions in the brain, but just where the coil is localed on the head. If you want to get a coil position that is optimal to target a specific brain region, please have a look at the ADM optimization approach. Best, Axel On 4/28/2021 5:52 AM, Fryer, Susanna wrote: > Hello, > > We are trying to model a TMS target that is in deep medial prefrontal > cortex/dorsal ACC, but are having trouble understanding how to > navigate to our desired target, which we have defined in MNI. > We are able to create models at the surface, but can't seem to > navigate the software to go into cortex. > > > Specifically, how do we convert our MNI coordinate to the coordinate > system that SIMnibs is using (and what coordinate system is it that > SIMnibs uses?).? How do we target below the surface? > > Thank you so much for guidance! > > > > _______________________________________________ > Simnibs-discuss mailing list > Simnibs-discuss at drcmr.dk > https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss -- Dr. Axel Thielscher Associate Professor Danish Research Center for Magnetic Resonance Copenhagen University Hospital Hvidovre DK-2650 Hvidovre, Denmark www.drcmr.dk & Department of Health Technology Technical University of Denmark DK-2800 Kgs. Lyngby http://www.healthtech.dtu.dk/ -------------- next part -------------- An HTML attachment was scrubbed... URL: From axelt at drcmr.dk Tue May 4 10:03:48 2021 From: axelt at drcmr.dk (Axel Thielscher) Date: Tue, 4 May 2021 10:03:48 +0200 Subject: [Simnibs-discuss] Parameter of coils In-Reply-To: <265401E2-1CAB-4423-BA7B-30ECB66FF6CE@hotmail.com> References: <265401E2-1CAB-4423-BA7B-30ECB66FF6CE@hotmail.com> Message-ID: Hi, do you want to model a specific TMS coil? If yes, which one? We might be able to supply you with a model for that. The models which we have are in general not parametric. Best regards, Axel On 4/20/2021 1:36 PM, ben kiffer wrote: > Dear Ladies and Gentlemen, > First, I want to give you a praise for Simnibs, the program has already helped me a lot in the field of transcranial magnetic stimulation and works perfectly. > I wanted to ask if somehow there is the possibility to adjust parameters (no. of coils & diameter) of the coil (Magstim_70mm_Fig8. nii. gz), this would make my work much easier and would bring me much further. I would be very happy to hear an answer. > With kind regards > Ben Kiffer > _______________________________________________ > Simnibs-discuss mailing list > Simnibs-discuss at drcmr.dk > https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss -- Dr. Axel Thielscher Associate Professor Danish Research Center for Magnetic Resonance Copenhagen University Hospital Hvidovre DK-2650 Hvidovre, Denmark www.drcmr.dk & Department of Health Technology Technical University of Denmark DK-2800 Kgs. Lyngby http://www.healthtech.dtu.dk/ From oulap at drcmr.dk Tue May 4 09:56:45 2021 From: oulap at drcmr.dk (Oula) Date: Tue, 4 May 2021 09:56:45 +0200 Subject: [Simnibs-discuss] About Mesh File In-Reply-To: References: Message-ID: <20210504080428.236654AA95B@curie.drcmr.dk> Hi Handan, Is the mesh a result of a headreco run? Could you please send us the log file (headreco_log.html) in the m2m_folder. I wasn?t able to open the link, and it seems to me that the attached screenshot relates to the fileshare system, which I unfortunately cannot help with. Best, Oula L?hett?j?: Handan Yaman L?hetetty: 26. april 2021 09:28 Vastaanottaja: discuss at simnibs.org Aihe: [Simnibs-discuss] About Mesh File Dear Simnibs Team, To open the "S20_FL.msh" file in the application, I am encountering an error at https://filesender.surf.nl/?s=download&token=43ba5d13-923c-4606 b0f0-8c9f836424e1 (I shared a photo of it in the attachment). Therefore, I am unable to make progress. I want to get your information on this subject. Sincerely Handan YAMAN -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 08768AD927914B47AC68EA217DAAD422.png Type: image/png Size: 91001 bytes Desc: not available URL: From oulap at drcmr.dk Tue May 4 10:01:06 2021 From: oulap at drcmr.dk (Oula) Date: Tue, 4 May 2021 10:01:06 +0200 Subject: [Simnibs-discuss] =?utf-8?q?Error_value_=E2=80=9Caxes_don=27t_mat?= =?utf-8?b?Y2ggYXJyYXnigJ0=?= In-Reply-To: References: Message-ID: <20210504080850.1B04B4AA955@curie.drcmr.dk> Hi Dennis, I?m guessing there?s something strange about either the orientation and/or the header of the image. Does the ouput from SPM (the tissue masks) look okay? If it?s possible for you to share the image I can have a look at it. In case you can share the image, maybe best not to send it to Simnibs-discuss. Best, Oula L?hett?j?: Schutter, D.J.L.G. (Dennis) L?hetetty: 22. april 2021 09:15 Vastaanottaja: discuss at simnibs.org Aihe: [Simnibs-discuss] Error value ?axes don't match array? Dear SimNIBS, First of all, thank you for the amazing program. I am struggling with creating a mesh (using headreco all) based on a NIFTI file that I converted from DICOM (with dicm2nii). While the first steps few steps in Matlab run successful, I get the error value ?axes don't match array? at the start of Binarizing tissue probability maps and program terminates (see below for complete message). When I run headreco all with Ernie?s NIFTI file the headreco all it works fine,? so I guess something went wrong with the conversion, but I cannot put my finger on the problem. The scan is a standard 3T scan: voxel dimensions: 1x1x1mm and image (XYZ) dimensions: 192x256x256, and the NIFTI scan looks fine in MRICRO and MANGO. I hope you can help me. Thank you very much for your valuable time and I look forward to hearing from you. Best wishes, Dennis Binarizing tissue probability maps ? Creating unity.xfm and ref_FS.nii.gz Traceback (most recent call last): ? File "C:\Users\schut103\SimNIBS-3.2\simnibs_env\lib\site-packages\simnibs\cli\headreco.py", line 13, in ??? main() ? ? File "C:\Users\schut103\SimNIBS-3.2\simnibs_env\lib\site-packages\simnibs\cli\headreco.py", line 10, in main ??? headmodel(sys.argv) ? ? File "C:\Users\schut103\SimNIBS-3.2\simnibs_env\lib\site-packages\simnibs\msh\headreco.py", line 286, in headmodel ??? hmu.write_ref_fs(vols_conform[0]) ? ? File "C:\Users\schut103\SimNIBS-3.2\simnibs_env\lib\site-packages\simnibs\msh\hmutils.py", line 3454, in write_ref_fs ??? data?? = np.transpose(np.zeros_like(vol.get_data()),(0,2,1)) ? ? File "C:\Users\schut103\SimNIBS-3.2\simnibs_env\lib\site-packages\numpy\core\fromnumeric.py", line 639, in transpose ??? return _wrapfunc(a, 'transpose', axes) ? ? File "C:\Users\schut103\SimNIBS-3.2\simnibs_env\lib\site-packages\numpy\core\fromnumeric.py", line 56, in _wrapfunc ??? return getattr(obj, method)(*args, **kwds) ? ValueError: axes don't match array -------------- next part -------------- An HTML attachment was scrubbed... URL: From axelt at drcmr.dk Tue May 4 20:51:28 2021 From: axelt at drcmr.dk (Axel Thielscher) Date: Tue, 4 May 2021 20:51:28 +0200 Subject: [Simnibs-discuss] Parameter of coils In-Reply-To: References: <265401E2-1CAB-4423-BA7B-30ECB66FF6CE@hotmail.com> Message-ID: <36c343cc-f5ae-f5d6-322b-f4e9cce1c756@drcmr.dk> Dear Ben, can you state more specifically what you mean by 9 coils? Does this refer to the number of cable loops for each half of the figure-8 coil? Best regards, Axel On 5/4/2021 11:37 AM, ben kiffer wrote: > Hi, > Thank you very much for the answer. > For my simulations I use the coil No29_MagVenture_C-B60_Fig8. nii. gz, however, according to the data sheet the coil has 5 coils and I would need the same coil with 9 coils for my work. > I would appreciate your feedback. > Best regards, > Ben > > Von meinem iPhone gesendet > >> Am 04.05.2021 um 10:03 schrieb Axel Thielscher : >> >> ?Hi, >> >> do you want to model a specific TMS coil? If yes, which one? We might be able to supply you with a model for that. The models which we have are in general not parametric. >> >> Best regards, >> >> Axel >> >> >>> On 4/20/2021 1:36 PM, ben kiffer wrote: >>> Dear Ladies and Gentlemen, >>> First, I want to give you a praise for Simnibs, the program has already helped me a lot in the field of transcranial magnetic stimulation and works perfectly. >>> I wanted to ask if somehow there is the possibility to adjust parameters (no. of coils & diameter) of the coil (Magstim_70mm_Fig8. nii. gz), this would make my work much easier and would bring me much further. I would be very happy to hear an answer. >>> With kind regards >>> Ben Kiffer >>> _______________________________________________ >>> Simnibs-discuss mailing list >>> Simnibs-discuss at drcmr.dk >>> https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmailman.drcmr.dk%2Fmailman%2Flistinfo%2Fsimnibs-discuss&data=04%7C01%7C%7C0a2752eadc034c9667b608d90ed32661%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637557122304625413%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=v1Usy2y2gXG6bYb9Ak6lQYFTPhBT7Rcs1TTG1Aqttwk%3D&reserved=0 >> -- >> Dr. Axel Thielscher >> Associate Professor >> Danish Research Center for Magnetic Resonance >> Copenhagen University Hospital Hvidovre >> DK-2650 Hvidovre, Denmark >> https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.drcmr.dk%2F&data=04%7C01%7C%7C0a2752eadc034c9667b608d90ed32661%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637557122304625413%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=tp%2FzHgKuuaFNa1BGTIcp1HvWi2dPMDSRZ5BzricgYAw%3D&reserved=0 >> & >> Department of Health Technology >> Technical University of Denmark >> DK-2800 Kgs. Lyngby >> https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.healthtech.dtu.dk%2F&data=04%7C01%7C%7C0a2752eadc034c9667b608d90ed32661%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637557122304625413%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=Z2a%2BMjcAm%2B58nmAOjo8HMxraunUoiD%2BU6Xc9qSp6KQg%3D&reserved=0 >> -- Dr. Axel Thielscher Associate Professor Danish Research Center for Magnetic Resonance Copenhagen University Hospital Hvidovre DK-2650 Hvidovre, Denmark www.drcmr.dk & Department of Health Technology Technical University of Denmark DK-2800 Kgs. Lyngby http://www.healthtech.dtu.dk/ From axelt at drcmr.dk Wed May 5 12:20:35 2021 From: axelt at drcmr.dk (Axel Thielscher) Date: Wed, 5 May 2021 12:20:35 +0200 Subject: [Simnibs-discuss] Parameter of coils In-Reply-To: References: <265401E2-1CAB-4423-BA7B-30ECB66FF6CE@hotmail.com> <36c343cc-f5ae-f5d6-322b-f4e9cce1c756@drcmr.dk> Message-ID: <29cc1d9e-ae83-8800-4ad3-a332a04b3c99@drcmr.dk> Hi Ben, increasing the number of turns while keeping the other parameters equal will only affect the absolute strength of the field, but not its spatial distribution. To simulate this effect, you can simply increase the simulated strength of the pulse by 9/5, and keep the same coil model. Best, Axel On 5/4/2021 9:39 PM, ben kiffer wrote: > Hi, > I apologize for the confusion. > The coil No29_MagVenture_C-B60_Fig8. nii. gz has 5 turns/ wing ? 2 wings ? 2 layers I need the following winding for my work 9 turns/ wing ? 2 wings ? 2 layers. The rest of the parameters should be equal. > Thank you in advance for your help. > Best, > Ben > > Von meinem iPhone gesendet > >> Am 04.05.2021 um 20:51 schrieb Axel Thielscher : >> >> ?Dear Ben, >> >> can you state more specifically what you mean by 9 coils? Does this refer to the number of cable loops for each half of the figure-8 coil? >> >> Best regards, >> >> Axel >> >> >>> On 5/4/2021 11:37 AM, ben kiffer wrote: >>> Hi, >>> Thank you very much for the answer. >>> For my simulations I use the coil No29_MagVenture_C-B60_Fig8. nii. gz, however, according to the data sheet the coil has 5 coils and I would need the same coil with 9 coils for my work. >>> I would appreciate your feedback. >>> Best regards, >>> Ben >>> >>> Von meinem iPhone gesendet >>> >>>>> Am 04.05.2021 um 10:03 schrieb Axel Thielscher : >>>> ?Hi, >>>> >>>> do you want to model a specific TMS coil? If yes, which one? We might be able to supply you with a model for that. The models which we have are in general not parametric. >>>> >>>> Best regards, >>>> >>>> Axel >>>> >>>> >>>>> On 4/20/2021 1:36 PM, ben kiffer wrote: >>>>> Dear Ladies and Gentlemen, >>>>> First, I want to give you a praise for Simnibs, the program has already helped me a lot in the field of transcranial magnetic stimulation and works perfectly. >>>>> I wanted to ask if somehow there is the possibility to adjust parameters (no. of coils & diameter) of the coil (Magstim_70mm_Fig8. nii. gz), this would make my work much easier and would bring me much further. I would be very happy to hear an answer. >>>>> With kind regards >>>>> Ben Kiffer >>>>> _______________________________________________ >>>>> Simnibs-discuss mailing list >>>>> Simnibs-discuss at drcmr.dk >>>>> https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmailman.drcmr.dk%2Fmailman%2Flistinfo%2Fsimnibs-discuss&data=04%7C01%7C%7C2a3d40f084424e350fac08d90f2da118%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637557510924393537%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=YkI08Fh3Gnmlr76E0VYJIv5Obnu2wSYbV9dqTfrPJW4%3D&reserved=0 >>>> -- >>>> Dr. Axel Thielscher >>>> Associate Professor >>>> Danish Research Center for Magnetic Resonance >>>> Copenhagen University Hospital Hvidovre >>>> DK-2650 Hvidovre, Denmark >>>> https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.drcmr.dk%2F&data=04%7C01%7C%7C2a3d40f084424e350fac08d90f2da118%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637557510924393537%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=ZVR0iqTKzUiFJBkAPP0QkfwX4vWjcLQBRPQdnjEGaNk%3D&reserved=0 >>>> & >>>> Department of Health Technology >>>> Technical University of Denmark >>>> DK-2800 Kgs. Lyngby >>>> https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.healthtech.dtu.dk%2F&data=04%7C01%7C%7C2a3d40f084424e350fac08d90f2da118%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637557510924393537%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=fYiIpLDH8KBj4syIG8f4FOl5xgRajMl3Z72FfcWyWns%3D&reserved=0 >>>> >> -- >> Dr. Axel Thielscher >> Associate Professor >> Danish Research Center for Magnetic Resonance >> Copenhagen University Hospital Hvidovre >> DK-2650 Hvidovre, Denmark >> https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.drcmr.dk%2F&data=04%7C01%7C%7C2a3d40f084424e350fac08d90f2da118%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637557510924393537%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=ZVR0iqTKzUiFJBkAPP0QkfwX4vWjcLQBRPQdnjEGaNk%3D&reserved=0 >> & >> Department of Health Technology >> Technical University of Denmark >> DK-2800 Kgs. Lyngby >> https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.healthtech.dtu.dk%2F&data=04%7C01%7C%7C2a3d40f084424e350fac08d90f2da118%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637557510924393537%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=fYiIpLDH8KBj4syIG8f4FOl5xgRajMl3Z72FfcWyWns%3D&reserved=0 >> -- Dr. Axel Thielscher Associate Professor Danish Research Center for Magnetic Resonance Copenhagen University Hospital Hvidovre DK-2650 Hvidovre, Denmark www.drcmr.dk & Department of Health Technology Technical University of Denmark DK-2800 Kgs. Lyngby http://www.healthtech.dtu.dk/ From ruxi_u_94 at hotmail.com Fri May 7 10:58:47 2021 From: ruxi_u_94 at hotmail.com (Ruxi U) Date: Fri, 7 May 2021 08:58:47 +0000 Subject: [Simnibs-discuss] Question Regarding tDCS Electrode Coordinates Message-ID: Hello, I have a question I am hoping someone could help me with. I have tried to simulate the tDCS-induced E-field using the provided example from the tutorial on an individual T1 image, with an anode over C3 and a cathode over Fp2. I was wondering if it would be possible to have the coordinates of the center of each electrodes? Thank you in advance for your help, Ruxandra Ungureanu -------------- next part -------------- An HTML attachment was scrubbed... URL: From tudor.sintu at mail.mcgill.ca Tue May 11 21:30:09 2021 From: tudor.sintu at mail.mcgill.ca (Tudor Sintu) Date: Tue, 11 May 2021 19:30:09 +0000 Subject: [Simnibs-discuss] Macaque mesh construction Message-ID: Hello, I have T1w and T2w scans for a macaque that I wish to create a mesh with to run tDCS simulations. I would like to use SimNIBS/headreco to do this, and I am wondering if it is possible to change templates/priors somehow to get the program working with the macaque scans. If anyone has any insight or experience on using SimNIBS with non-human primates, your input would be greatly appreciated. Best, Tudor Sintu -------------- next part -------------- An HTML attachment was scrubbed... URL: From utkarshpancholi6387 at gmail.com Wed May 12 06:37:27 2021 From: utkarshpancholi6387 at gmail.com (Utkarsh Pancholi) Date: Wed, 12 May 2021 10:07:27 +0530 Subject: [Simnibs-discuss] Head mesh file not generated after head reco all command Message-ID: Please check the html log .. I have done head reco all commands on .nii file.. It took almost 4 hours to complete. But I couldn't find the .msh file... Please see what needs to be done. Please reply as soon as possible. Thank you in advance sir. ----------------------------------------------------------------------------------------------------- UTKARSH V. PANCHOLI ASSISTANT PROFESSOR BIOMEDICAL ENGINEERING L.D COLLEGE OF ENGINEERING AHMEDABAD-380015 Virus-free. www.avast.com <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- An HTML attachment was scrubbed... URL: From emile.radyte at chch.ox.ac.uk Mon May 24 11:51:55 2021 From: emile.radyte at chch.ox.ac.uk (Emile Radyte) Date: Mon, 24 May 2021 09:51:55 +0000 Subject: [Simnibs-discuss] Simulating 2 TMS coils at the same time Message-ID: Good afternoon, Hope you are well! Just confirming based on past documentation that it is not possible to simulate two TMS coils at the same time (only in parallel) on Simnibs? Please do let me know otherwise! Thank you very much, Emil? -------------- next part -------------- An HTML attachment was scrubbed... URL: From kristofferm at drcmr.dk Mon May 24 15:21:13 2021 From: kristofferm at drcmr.dk (Kristoffer Madsen) Date: Mon, 24 May 2021 15:21:13 +0200 Subject: [Simnibs-discuss] Simulating 2 TMS coils at the same time In-Reply-To: References: Message-ID: Yes, indeed as the result of two coil stimulating at the same time will be a linear superposition, you simply run the two analyses in parallel and add the results (you can script that if that is more convenient). In principle one could also add the A fields prior to simulation, but we typically favor the approach with separate simulation for the flexibility (the actual result will be the same). Best, Kristoffer On Mon, 24 May 2021 at 12:50, Emile Radyte wrote: > > Good afternoon, > > > > Hope you are well! Just confirming based on past documentation that it is not possible to simulate two TMS coils at the same time (only in parallel) on Simnibs? > > > > Please do let me know otherwise! > > Thank you very much, > > > > Emil? > > _______________________________________________ > Simnibs-discuss mailing list > Simnibs-discuss at drcmr.dk > https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss From a.dantas at maastrichtuniversity.nl Wed May 26 14:33:39 2021 From: a.dantas at maastrichtuniversity.nl (Dantas, A (MW)) Date: Wed, 26 May 2021 12:33:39 +0000 Subject: [Simnibs-discuss] SimNIBS simulation - TMS study - Overlap figure In-Reply-To: <1621441760989.125@student.maastrichtuniversity.nl> References: <1621441760989.125@student.maastrichtuniversity.nl> Message-ID: <2d3cb36871ba48bbb00cd88bda1218e6@UM-MAIL3217.unimaas.nl> Dear all, My student Nancy ?bner got in touch with you recently about the need for a Magventure double cone coil simulation using SimNIBS. We ran the simulations successfully, so first of all I would like to thank you! We have an experiment deactivating the VMPFC vs. deactivating the right DLPFC. So far, we managed to run both simulations, but it would be great if we could the overlap image of stimulating these two areas. We tried to make it but did not succeed. Do you think you could help me to build that? Thank you! Kind regards, Aline Dantas -------------- next part -------------- An HTML attachment was scrubbed... URL: From faka129 at googlemail.com Wed May 26 17:09:55 2021 From: faka129 at googlemail.com (Fabian Kaiser) Date: Wed, 26 May 2021 17:09:55 +0200 Subject: [Simnibs-discuss] Headreco Error at "Creating unity.xfm and ref_FS.nii.gz" Message-ID: Dear SimNIBS mailing list, I have used headreco in the past to produce some beautiful segmentations but recently when I tried it again, I have run into an error. I suspect something really basic is wrong here but I can't figure out what it is. The log file is attached! Thank you in advance for your help! SIncerely, Fabian Kaiser -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- An HTML attachment was scrubbed... URL: