[Simnibs-discuss] Probably something went wrong with the Matlab call or SPM

[sepideh khaksar]

hi
Although MATLAB is installed, I get the following error when I use Headerco
on Linux
headreco all --cat ernie org/ernie_T1.nii.gz org/ernie_T2.nii.gz

========================================================================
PREPARING VOLUMES FOR MESHING
========================================================================

Copying input files to m2m_ernie

Copying T1fs.nii.gz to T1fs_conform.nii.gz
Preparing to segment

Starting MATLAB
========================================================================
Binarizing tissue probability maps
Traceback (most recent call last):
  File
"/home/sepideh/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py",
line 13, in <module>
    main()
  File
"/home/sepideh/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/cli/headreco.py",
line 10, in main
    headmodel(sys.argv)
  File
"/home/sepideh/SimNIBS-3.2/simnibs_env/lib/python3.7/site-packages/simnibs/msh/headreco.py",
line 265, in headmodel
    raise OSError('Could not find tissue probability maps.\n'
OSError: Could not find tissue probability maps.
Probably something went wrong with the Matlab call or SPM

What is the problem? Thank you for your help
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