From wjh601 at snu.ac.kr Fri Jan 3 00:50:31 2020 From: wjh601 at snu.ac.kr (=?UTF-8?B?7Jqw7KSA7ZiB?=) Date: Fri, 3 Jan 2020 08:50:31 +0900 Subject: [Simnibs-discuss] simnibs error code 139 Message-ID: Dear simnibs developers, Hello, thank you for offering great software for me. Simnibs goes well for most of my data. But, one of them gives error code 139. I entered the code, which runs gmsh, directly in my terminal and I got the segmentation fault error. I would be glad if you can help me. Sincerely, JunHyuk Woo -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- An HTML attachment was scrubbed... URL: From axelt at drcmr.dk Mon Jan 6 19:36:00 2020 From: axelt at drcmr.dk (Axel Thielscher) Date: Mon, 6 Jan 2020 19:36:00 +0100 Subject: [Simnibs-discuss] simnibs error code 139 In-Reply-To: References: Message-ID: <846b1b63-bf8e-933d-cca6-02cb09e50dac@drcmr.dk> Dear JunHyuk, please try again with the additonal option --numvertices=80000 If the error persists, it would be great if you could send us the MR files, e.g. via a filelink to support at simnibs.org. Best regards, Axel On 1/3/2020 12:50 AM, ??? wrote: > Dear simnibs developers, > > Hello, thank you for offering great software for me. > Simnibs goes well for most of my data. > But, one of them gives error code 139. > I entered the code, which runs gmsh, directly in my terminal and I got > the segmentation fault error. > I would be glad if you can help me. > > Sincerely, > JunHyuk Woo > > _______________________________________________ > Simnibs-discuss mailing list > Simnibs-discuss at drcmr.dk > https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss -- Dr. Axel Thielscher Associate Professor Danish Research Center for Magnetic Resonance Copenhagen University Hospital Hvidovre DK-2650 Hvidovre, Denmark www.drcmr.dk & Department of Health Technology Technical University of Denmark DK-2800 Kgs. Lyngby http://www.elektro.dtu.dk/ -------------- next part -------------- An HTML attachment was scrubbed... URL: From weisheep at mail.ustc.edu.cn Mon Jan 13 16:31:28 2020 From: weisheep at mail.ustc.edu.cn (weisheep at mail.ustc.edu.cn) Date: Mon, 13 Jan 2020 23:31:28 +0800 (GMT+08:00) Subject: [Simnibs-discuss] How to get the normal and tangential electric field intensity on the brain using simNIBS? Message-ID: <5a020d84.55b1.16f9f880214.Coremail.weisheep@mail.ustc.edu.cn> Hi, I start to using simNIBS to simulate in tDCS. As the page at simNIBS said, the normal section of the electric field on the brain is important in tDCS. So I am trying to get the normal and the tangential electric field on the brain. How to get these in the simNIBS software? Is there an option for the normal electric field? I notice there is "vector E", "norm E" and "current intensity" options, but nothing related to "normal". Or I can only export the vector E and the normal vector of surfaces of brain, then get it myself? If the simNIBS has a way to do it, could anyone give me an example or command to achieve it? Thank you very much. Bests. -- Zhang Wei Life Science School University of Science and Technology of China -------------- next part -------------- An HTML attachment was scrubbed... URL: From guilhermebs at drcmr.dk Mon Jan 13 18:48:19 2020 From: guilhermebs at drcmr.dk (Guilherme Saturnino) Date: Mon, 13 Jan 2020 14:48:19 -0300 Subject: [Simnibs-discuss] How to get the normal and tangential electric field intensity on the brain using simNIBS? In-Reply-To: <3eec1121-2717-3e0e-83ea-83789de93c93@drcmr.dk> References: <5a020d84.55b1.16f9f880214.Coremail.weisheep@mail.ustc.edu.cn> <3eec1121-2717-3e0e-83ea-83789de93c93@drcmr.dk> Message-ID: On 1/13/20 14:46, Guilherme Saturnino wrote: > > Hello, > > > Thanks a lot for your interest in SimNIBS! > > > Normal and tangential fields are calculated when the field is > interpolated to the cortical surface. To do it, just check the > "interpolate to cortical surface" box in Edit->Simulation Options. > > > Best Regards, > > Guilherme > > > On 1/13/20 12:31, weisheep at mail.ustc.edu.cn wrote: >> >> Hi, >> I start to using simNIBS to simulate in tDCS. As the page at simNIBS >> said, the normal section of the electric field on the brain is >> important in tDCS. So I am trying to get the normal and the >> tangential electric field on the brain. How to get these in the >> simNIBS software? Is there an option for the normal electric field? I >> notice there is "vector E", "norm E" and "current intensity" options, >> but nothing related to "normal". Or I can only export the vector E >> and the normal vector of surfaces of brain, then get it myself? If >> the simNIBS has a way to do it, could anyone give me an example or >> command to achieve it? >> Thank you very much. >> Bests. >> >> >> -- >> Zhang Wei >> Life Science School >> University of Science and Technology of China >> >> _______________________________________________ >> Simnibs-discuss mailing list >> Simnibs-discuss at drcmr.dk >> https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss -------------- next part -------------- An HTML attachment was scrubbed... URL: From gnorthoff at hotmail.com Tue Jan 14 14:44:32 2020 From: gnorthoff at hotmail.com (Northoff Georg) Date: Tue, 14 Jan 2020 13:44:32 +0000 Subject: [Simnibs-discuss] GL problem when running GUI Message-ID: Hi, I just installed SIMNIBS. Thanks for the wonderful tool. I met an error message about GL problem. I've tried to update my monitor driver but the error still there (win 10, HP). I've not tested the program extensively. Just a brief report, not necessarily on discussion list. Thx, George ~ -------------- next part -------------- An HTML attachment was scrubbed... URL: From guilhermebs at drcmr.dk Tue Jan 14 15:34:05 2020 From: guilhermebs at drcmr.dk (Guilherme Saturnino) Date: Tue, 14 Jan 2020 11:34:05 -0300 Subject: [Simnibs-discuss] GL problem when running GUI In-Reply-To: References: Message-ID: Hello, Thanks you for using SimNBIS! For solving issues related to OpenGL, please to update your /video (or graphics) driver/, and not the monitor driver. Best Regards, Guilherme On 1/14/20 10:44, Northoff Georg wrote: > > Hi, I just installed SIMNIBS. Thanks for the wonderful tool. > > I met an error message about GL problem. I?ve tried to update my > monitor driver but the error still there (win 10, HP). > > I?ve not tested the program extensively. Just a brief report, not > necessarily on discussion list. > > Thx, George ~ > > > _______________________________________________ > Simnibs-discuss mailing list > Simnibs-discuss at drcmr.dk > https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss -------------- next part -------------- An HTML attachment was scrubbed... URL: From weisheep at mail.ustc.edu.cn Wed Jan 15 10:59:52 2020 From: weisheep at mail.ustc.edu.cn (weisheep at mail.ustc.edu.cn) Date: Wed, 15 Jan 2020 17:59:52 +0800 (GMT+08:00) Subject: [Simnibs-discuss] How to change the range of the color bar in simNIBS? Message-ID: <692342a8.a4dc.16fa8a52259.Coremail.weisheep@mail.ustc.edu.cn> Hi, I am using simNIBS to simulate a few tDCS stimulation results. I am trying to compare the results more conveniently by changing the range of the color bar at the bottom of the result figure. Is there an option to change the maximum and minimum of the color(red/blue) bar? Thank you very much. Any suggestion will be appreciate. Bests. -- Zhang Wei Life Science School University of Science and Technology of China -------------- next part -------------- An HTML attachment was scrubbed... URL: From guilhermebs at drcmr.dk Thu Jan 16 11:48:32 2020 From: guilhermebs at drcmr.dk (Guilherme B Saturnino) Date: Thu, 16 Jan 2020 11:48:32 +0100 Subject: [Simnibs-discuss] How to change the range of the color bar in simNIBS? In-Reply-To: <692342a8.a4dc.16fa8a52259.Coremail.weisheep@mail.ustc.edu.cn> References: <692342a8.a4dc.16fa8a52259.Coremail.weisheep@mail.ustc.edu.cn> Message-ID: Hello, Sure. To visualize results we use a third-party program called GMSH. In the link below, we ho through some basics on how to configure your view, including how to set ranges (under "Changing the Scale"). https://simnibs.github.io/simnibs/build/html/tutorial/visualization.html Best Regards, Guilherme On 15/01/2020 10.59, weisheep at mail.ustc.edu.cn wrote: > > Hi, > I am using simNIBS to simulate a few tDCS stimulation results. I am > trying to compare the results more conveniently by changing the range > of the color bar at the bottom of the result figure. Is there an > option to change the maximum and minimum of the color(red/blue) bar? > Thank you very much. Any suggestion will be appreciate. > Bests. > > -- > Zhang Wei > Life Science School > University of Science and Technology of China > > _______________________________________________ > Simnibs-discuss mailing list > Simnibs-discuss at drcmr.dk > https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss -------------- next part -------------- An HTML attachment was scrubbed... URL: From jonas.persson at neuro.uu.se Mon Jan 27 12:04:04 2020 From: jonas.persson at neuro.uu.se (Jonas Persson) Date: Mon, 27 Jan 2020 11:04:04 +0000 Subject: [Simnibs-discuss] Coil Model: MagVenture D-B80 Message-ID: <018c4cf0bf4e434ab2b0e13fba9da92b@neuro.uu.se> Hello! Thank you for a great software and for the many coil models available! I am particularly interested in the D-B80 butterfly coil from MagVenture and I noticed that this particular model, though published in Deng et al. (2013) had not been converted to simnibs. Is there any reason for this? Can its features be easily derived from other available models, or how involved would it be to create one? I could not find the .cad files available for download anywhere. Thank you for any help on this subject! Best, Jonas N?r du har kontakt med oss p? Uppsala universitet med e-post s? inneb?r det att vi behandlar dina personuppgifter. F?r att l?sa mer om hur vi g?r det kan du l?sa h?r: http://www.uu.se/om-uu/dataskydd-personuppgifter/ E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy -------------- next part -------------- An HTML attachment was scrubbed... URL: