[Simnibs-discuss] about display result in deeper area

[Axel Thielscher]

Dear JS,

in gmsh: You can look at the results in the gray matter and white matter 
volumes in gmsh. Please see notes on "Visibility" on 
https://simnibs.github.io/simnibs/build/html/tutorial/visualization.html 
and select element numbers 1 and 2 for white and gray matter. Once this 
is shown, you can cut it as you like (see "Clipping" on 
https://simnibs.github.io/simnibs/build/html/tutorial/visualization.html).

gmsh is very flexible, but has some initial learning curve.

Alternatively, you can select "Interpolate to a nifiti volume" when you 
set up a simulation (see 
https://simnibs.github.io/simnibs/build/html/tutorial/gui.html). Then, 
the results will be also saved as nifti-files in the subfolder 
"subject_volumes" of each simulation and you can use any nifti-viewer to 
look at your results.

Best regards,

Axel

/
/



On 12/20/2020 2:19 AM, 刘习杰 wrote:
> Hello SIMNIBS community,
>
> I wished I could let the EF go deeper in brain when I design new coils 
> for TMS . I check the design with SIMNIBS but do not know how to find 
> computed result except in the gray matter area. Would you help to tell 
> how to show the result in deeper area? Is there a way to display in 
> cross section? Or which is the numerical result file which I could 
> import and display with Matlab?
>
> Thanks,
>
> JS
>
>
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> Simnibs-discuss at drcmr.dk
> https://mailman.drcmr.dk/mailman/listinfo/simnibs-discuss

-- 
Dr. Axel Thielscher
Associate Professor
Danish Research Center for Magnetic Resonance
Copenhagen University Hospital Hvidovre
DK-2650 Hvidovre, Denmark
www.drcmr.dk
&
Department of Health Technology
Technical University of Denmark
DK-2800 Kgs. Lyngby
http://www.healthtech.dtu.dk/

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